PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00939.1.p
Common NameEUGRSUZ_J00939, LOC104421674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 479aa    MW: 52186.4 Da    PI: 9.2499
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00939.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056486123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C++C+k F r  nL+ H r H
  Eucgr.J00939.1.p 64 FICEICNKGFQRDQNLQLHRRGH 86
                      89*******************88 PP

2zf-C2H211.90.00067141163123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H + +
  Eucgr.J00939.1.p 141 WKCEKCSKKYAVQSDWKAHSKIC 163
                       58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-76386No hitNo description
PROSITE profilePS5015710.8456486IPR007087Zinc finger, C2H2
SMARTSM003550.0226486IPR015880Zinc finger, C2H2-like
PfamPF121715.7E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035579106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MMSGDGLSLP STISGFVRQD PSSLTNPNPS SNPSKKKRSL PGTPDPDAEV IALSPKSLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEL IRRKVYICPE ETCVHHDPSR  120
ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALTEEGARFT SLANTNLNFG NELINGTMTN STANAPNLSI SMPDQFDGQS  240
SSSQVPIWMN HVDPNLNPLG LMASGGDSYF TTPSSGSLLP DFVQASQVPI GMLKNCSTPA  300
SSEASLIKQE ESIKANMSDQ TIGSLYSNNH PSHRGSTGHL SATALLQKAA QLGSTRNNNS  360
ASLLINNNAV LSSSSSSSSL FPSSLSTASD FNPYTPQPRN SPRVLYRQYP SSRVESSAGQ  420
TESRKLHASP DGVENSMTRD FLGVGSESRP FLVHRELRRF SPSVGSSMEG AGEAAEFT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00939.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032012.10.0PREDICTED: zinc finger protein JACKDAW
RefseqXP_010032013.10.0PREDICTED: zinc finger protein JACKDAW
SwissprotQ700D21e-128IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A059ABD40.0A0A059ABD4_EUCGR; Uncharacterized protein
STRINGVIT_06s0004g03070.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-106C2H2-like zinc finger protein